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Daily Report

Daily Respiratory Research Analysis

03/18/2025
3 papers selected
3 analyzed

A phase 3 randomized trial (SESAR) found inhaled sevoflurane sedation led to fewer ventilator-free days and lower 90-day survival than intravenous propofol in ARDS, indicating potential harm. Metatranscriptomic profiling of pediatric acute sinusitis/URI captured both pathogens and host-response signatures with high concordance to standard tests and suggested diagnostic biomarkers. Mechanistic work in mice showed platelet 12-lipoxygenase deficiency worsens SARS-CoV-2 lung inflammation, highlighti

Summary

A phase 3 randomized trial (SESAR) found inhaled sevoflurane sedation led to fewer ventilator-free days and lower 90-day survival than intravenous propofol in ARDS, indicating potential harm. Metatranscriptomic profiling of pediatric acute sinusitis/URI captured both pathogens and host-response signatures with high concordance to standard tests and suggested diagnostic biomarkers. Mechanistic work in mice showed platelet 12-lipoxygenase deficiency worsens SARS-CoV-2 lung inflammation, highlighting a lipid pathway target.

Research Themes

  • Sedation strategies and outcomes in ARDS
  • Metatranscriptomic diagnostics for pediatric respiratory infections
  • Platelet lipid metabolism in viral lung inflammation

Selected Articles

1. Inhaled Sedation in Acute Respiratory Distress Syndrome: The SESAR Randomized Clinical Trial.

82.5Level IRCT
JAMA · 2025PMID: 40098564

In this phase 3 randomized, assessor-blinded trial of 687 ARDS patients, inhaled sevoflurane sedation led to fewer ventilator‑free days by day 28 and lower 90‑day survival compared with intravenous propofol. Early 7‑day mortality and ICU‑free days were also worse with sevoflurane.

Impact: This high‑quality RCT directly informs sedation choice in ARDS and indicates potential harm with inhaled sevoflurane. The negative but definitive findings can change ICU practice and guidelines.

Clinical Implications: For moderate-to-severe ARDS requiring deep sedation, prioritize intravenous propofol over inhaled sevoflurane outside of research protocols; review institutional sedation pathways and device availability. Monitor for early mortality risk when using inhaled agents.

Key Findings

  • Sevoflurane resulted in fewer ventilator‑free days at day 28 vs propofol (median difference −2.1 days, 95% CI −3.6 to −0.7).
  • 90‑day survival was lower with sevoflurane (47.1%) than propofol (55.7%; HR 1.31, 95% CI 1.05–1.62).
  • Higher 7‑day mortality and fewer ICU‑free days through day 28 occurred with sevoflurane.

Methodological Strengths

  • Phase 3 multicenter randomized design with assessor blinding
  • Prespecified primary and key secondary endpoints with adequate sample size (n=687)

Limitations

  • Open-label to treating teams may introduce performance bias
  • Results reflect French ICUs and device availability; generalizability to other settings may vary

Future Directions: Conduct pragmatic trials on sedation bundles incorporating analgesia-first strategies; explore mechanistic reasons for harm with volatile agents in ARDS (e.g., alveolar inflammation, hemodynamics).

IMPORTANCE: Whether the use of inhaled or intravenous sedation affects outcomes differentially in mechanically ventilated adults with acute respiratory distress syndrome (ARDS) is unknown. OBJECTIVE: To determine the efficacy and safety of inhaled sevoflurane compared with intravenous propofol for sedation in patients with ARDS. DESIGN, SETTING, AND PARTICIPANTS: Phase 3 randomized, open-label, assessor-blinded clinical trial conducted from May 2020 to October 2023 with 90-day follow-up. Adults with early moderate to severe ARDS (defined by a ratio of Pao2 to the fraction of inspired oxygen of <150 mm Hg with a positive end-expiratory pressure of ≥8 cm H2O) were enrolled in 37 French intensive care units. INTERVENTIONS: Patients were randomized to a strategy of inhaled sedation with sevoflurane (intervention group) or to a strategy of intravenous sedation with propofol (control group) for up to 7 days. MAIN OUTCOMES AND MEASURES: The primary end point was the number of ventilator-free days at 28 days; the key secondary end point was 90-day survival. RESULTS: Of 687 patients enrolled (mean [SD] age, 65 [12] years; 30% female), 346 were randomized to sevoflurane and 341 to propofol. The median total duration of sedation was 7 days (IQR, 4 to 7) in both groups. The number of ventilator-free days through day 28 was 0.0 days (IQR, 0.0 to 11.9) in the sevoflurane group and 0.0 days (IQR, 0.0 to 18.7) in the propofol group (median difference, -2.1 [95% CI, -3.6 to -0.7]; standardized hazard ratio, 0.76 [95% CI, 0.50 to 0.97]). The 90-day survival rates were 47.1% and 55.7% in the sevoflurane and propofol groups, respectively (hazard ratio, 1.31 [95% CI, 1.05 to 1.62]). Among 4 secondary outcomes, sevoflurane was associated with higher 7-day mortality (19.4% vs 13.5%, respectively; relative risk, 1.44 [95% CI, 1.02 to 2.03]) and fewer intensive care unit-free days through day 28 (median, 0.0 [IQR, 0.0 to 6.0] vs 0.0 [IQR, 0.0 to 15.0]; median difference, -2.5 [95% CI, -3.7 to -1.4]) compared with propofol. CONCLUSIONS AND RELEVANCE: Among patients with moderate to severe ARDS, inhaled sedation with sevoflurane resulted in fewer ventilator-free days at day 28 and lower 90-day survival than sedation with propofol. TRIAL REGISTRATION: ClinicalTrials.gov Identifier: NCT04235608.

2. Metatranscriptomic profiling reveals pathogen and host response signatures of pediatric acute sinusitis and upper respiratory infection.

80Level IIICohort
Genome medicine · 2025PMID: 40098147

Untargeted RNA-seq of nasopharyngeal samples from 221 children achieved high sensitivity/specificity for common bacterial and viral pathogens versus culture/qRT‑PCR, detected additional untested pathogens, and reconstructed 196 viral genomes. Host-expression signatures distinguished bacterial from viral infections, nominating hundreds of diagnostic biomarker candidates.

Impact: This study integrates pathogen detection with host-response profiling at scale, creating a unique dataset and revealing actionable biomarker candidates for distinguishing bacterial from viral pediatric URIs.

Clinical Implications: While not yet ready for routine care, metatranscriptomic diagnostics could reduce unnecessary antibiotics by resolving viral vs bacterial etiologies; host-response markers may be translated into rapid assays.

Key Findings

  • RNA-seq showed 87%/81% sensitivity/specificity for three AS‑associated bacteria and 86%/92% for 12 respiratory viruses vs clinical tests.
  • Detected 22 additional pathogens not clinically tested and identified plausible agents in 58% of otherwise negative cases.
  • Reconstructed 196 viral genomes (including novel strains) and defined host-response signatures distinguishing bacterial vs viral infections.

Methodological Strengths

  • Parallel benchmarking against both culture and qRT‑PCR across 221 pediatric cases
  • Dual profiling of pathogen reads and host transcriptome enabling biomarker discovery

Limitations

  • Single time‑point sampling; no prospective clinical utility assessment or impact on antibiotic prescribing
  • Cost, turnaround time, and bioinformatics infrastructure remain barriers for routine deployment

Future Directions: Prospective validation in pragmatic trials linking RNA‑seq outputs to antibiotic decisions; translate host‑response gene sets into rapid point‑of‑care assays.

BACKGROUND: Acute sinusitis (AS) is a frequent cause of antibiotic prescriptions in children. Distinguishing bacterial AS from common viral upper respiratory infections (URIs) is crucial to prevent unnecessary antibiotic use but is challenging with current diagnostic methods. Despite its speed and cost, untargeted RNA sequencing of clinical samples from children with suspected AS has the potential to overcome several limitations of other methods. In addition, RNA-seq may reveal novel host-response biomarkers for development of future diagnostic assays that distinguish bacterial from viral infections. There are however no available RNA-seq datasets of pediatric AS that provide a comprehensive view of both pathogen etiology and host immune response. METHODS: Here, we performed untargeted RNA-seq (metatranscriptomics) of nasopharyngeal samples from 221 children with AS and performed a comprehensive analysis of pathogen etiology and the impact of bacterial and viral infections on host immune responses. Accuracy of RNA-seq-based pathogen detection was evaluated by comparison with culture tests for three common bacterial pathogens and qRT-PCR tests for 12 respiratory viruses. Host gene expression patterns were explored to identify potential host responses that distinguish bacterial from viral infections. RESULTS: RNA-seq-based pathogen detection showed high concordance with culture or qRT-PCR, showing 87%/81% sensitivity (sens) / specificity (spec) for detecting three AS-associated bacterial pathogens, and 86%/92% (sens/spec) for detecting 12 URI-associated viruses, respectively. RNA-seq also detected an additional 22 pathogens not tested for clinically and identified plausible pathogens in 11/19 (58%) of cases where no organism was detected by culture or qRT-PCR. We reconstructed genomes of 196 viruses across the samples including novel strains of coronaviruses, respiratory syncytial virus, and enterovirus D68, which provide useful genomic data for ongoing pathogen surveillance programs. By analyzing host gene expression, we identified host-response signatures that differentiate bacterial and viral infections, revealing hundreds of candidate gene biomarkers for future diagnostic assays. CONCLUSIONS: Our study provides a one-of-kind dataset that profiles the interplay between pathogen infection and host responses in pediatric AS and URI. It reveals bacterial and viral-specific host responses that could enable new diagnostic approaches and demonstrates the potential of untargeted RNA-seq in diagnostic analysis of AS and URI.

3. Deficiency in platelet 12-lipoxygenase exacerbates inflammation and disease severity during SARS-CoV-2 infection.

77.5Level IVCohort
Proceedings of the National Academy of Sciences of the United States of America · 2025PMID: 40100623

In mice lacking platelet 12‑LOX, SARS‑CoV‑2 infection caused greater lung inflammation, altered platelet/lung transcriptomes (including NLRP1‑linked genes), decreased protective 12‑HETrE, and worse survival vs wild‑type. Platelet lipid enzymatic pathways modulate COVID‑19 severity.

Impact: Identifies platelet 12‑LOX–derived lipids as modulators of lung inflammation and survival in SARS‑CoV‑2 infection, suggesting a tractable therapeutic axis in viral respiratory disease.

Clinical Implications: Although preclinical, results caution against indiscriminate inhibition of platelet 12‑LOX in COVID‑19 and support exploring lipid‑mediator–based therapies to mitigate hyperinflammation.

Key Findings

  • Platelet 12‑LOX deficiency increased lung inflammation, leukocyte infiltrates, cytokines, and reduced survival after SARS‑CoV‑2 infection in mice.
  • Transcriptomic changes included NLRP1 inflammasome–related pathways in platelets and lungs.
  • Lipidomics showed reduced 12‑HETrE levels inversely correlated with disease severity.

Methodological Strengths

  • Integrated histopathology, transcriptomics, and lipidomics across platelet and lung compartments
  • Genetic model enabling causal inference for the 12‑LOX pathway

Limitations

  • Findings are in murine models; human translational relevance requires validation
  • Specificity to SARS‑CoV‑2 vs generalizable to other respiratory viruses remains to be defined

Future Directions: Validate platelet 12‑LOX signatures and lipid mediators in human COVID‑19 cohorts; explore pharmacologic modulation of 12‑LOX–derived lipids as adjunctive therapy.

Platelets, known for maintaining blood balance, also participate in antimicrobial defense. Upon severeacute respiratory syndrome coronavirus 2 (SARS-CoV-2) infection, platelets become hyperactivated, releasing molecules such as cytokines, granule contents, and bioactive lipids. The key effector biolipids produced by platelets include 12-hydroxyeicosatetraenoic acid (12-HETE) and 12-hydroxyeicosatrienoic acid (12-HETrE), produced by 12-lipoxygenase (12-LOX), and prostaglandins and thromboxane, produced by cyclooxygenase-1. While prostaglandin E2 and thromboxane B2 were previously associated with lung inflammation in severe COVID-19, the role of platelet 12-LOX in SARS-CoV-2 infection remains unclear. Using mice deficient for platelets' 12-LOX, we report that SARS-CoV-2 infection resulted in higher lung inflammation characterized by histopathological tissue analysis, increased leukocyte infiltrates, and cytokine production relative to wild-type mice. In addition, distinct platelet and lung transcriptomic changes, including alterations in NOD-like receptor (NLR) family pyrin domain-containing 1 (NLRP1) inflammasome-related gene expression, were observed. Mass spectrometry lipidomic analysis in 12-LOX-deficient-infected mice revealed significant changes in bioactive lipid content, including reduced levels of 12-HETrE that inversely correlated with disease severity. Finally, platelet 12-LOX deficiency was associated with increased morbidity and lower survival rates relative to wild type (WT) mice. Overall, this study highlights the complex interplay between 12-LOX-related lipid metabolism and inflammatory responses during SARS-CoV-2 infection. The findings provide valuable insights into potential therapeutic targets aimed at mitigating severe outcomes, emphasizing the pivotal role of platelet enzymes in the host response to viral infections.