Daily Respiratory Research Analysis
Three advances span the respiratory spectrum: biomarker-guided biologic therapy in COPD, a platform tRNA approach rescuing CFTR function for cystic fibrosis nonsense mutations, and an engineered mRNA RSV vaccine forming eVLPs that improves antibody durability and dose-sparing in mice. Together, they point to precision therapeutics, genetic code suppression strategies, and next-generation vaccine design for respiratory diseases.
Summary
Three advances span the respiratory spectrum: biomarker-guided biologic therapy in COPD, a platform tRNA approach rescuing CFTR function for cystic fibrosis nonsense mutations, and an engineered mRNA RSV vaccine forming eVLPs that improves antibody durability and dose-sparing in mice. Together, they point to precision therapeutics, genetic code suppression strategies, and next-generation vaccine design for respiratory diseases.
Research Themes
- Biomarker-driven therapy in COPD
- Genetic code suppression for cystic fibrosis nonsense mutations
- Next-generation RSV mRNA vaccine design using eVLPs
Selected Articles
1. Type 2 inflammation biomarkers and their association with response to dupilumab in COPD (BOREAS): an analysis of a randomised, placebo-controlled, phase 3 trial.
In a post-hoc analysis of the phase 3 BOREAS trial in COPD with type 2 inflammation, dupilumab led to greater 52-week reductions in total IgE, FeNO, eotaxin-3, and PARC versus placebo. Higher baseline blood eosinophils and FeNO predicted larger reductions in exacerbation risk, supporting biomarker-guided use of dupilumab.
Impact: This analysis links type 2 biomarkers to clinical response in a large, multicentre RCT, enabling precision selection of COPD patients for dupilumab and supporting longitudinal biomarker monitoring.
Clinical Implications: For COPD patients with eosinophils ≥300/μL, baseline eosinophil count and FeNO can guide dupilumab initiation, and serial biomarker tracking (IgE, FeNO, eotaxin-3, PARC) may help assess response and optimize therapy.
Key Findings
- At week 52, dupilumab achieved greater median percentage reductions than placebo in total IgE (-22.5% vs -0.9%), FeNO (-28.6% vs -6.9%), eotaxin-3 (-8.8% vs -0.4%), and PARC (-14.4% vs -0.8%).
- Higher baseline blood eosinophil counts predicted a greater reduction in exacerbation risk with dupilumab (interaction p=0.0056).
- Higher baseline FeNO also predicted a greater reduction in exacerbation risk with dupilumab (interaction p=0.043).
Methodological Strengths
- Large, multicentre, double-blind RCT parent trial with 939 patients and 52-week follow-up
- Comprehensive biomarker panel (eosinophils, FeNO, IgE, eotaxin-3, PARC) with longitudinal assessment
Limitations
- Post-hoc analysis not prespecified, susceptible to multiplicity and residual confounding
- Biomarker thresholds and generalisability to different inhaled corticosteroid backgrounds require prospective validation
Future Directions: Prospectively validate eosinophil and FeNO thresholds for dupilumab response, integrate biomarker algorithms into COPD care pathways, and assess cost-effectiveness of biomarker-guided biologic therapy.
BACKGROUND: A raised blood eosinophil count (≥300 cells per μL), a marker of type 2 inflammation, can identify patients with chronic obstructive pulmonary disease (COPD) with higher exacerbation risk. Dupilumab reduced exacerbations in patients with COPD and type 2 inflammation in the BOREAS trial. In this post-hoc analysis, we evaluated the predictive value and longitudinal changes in type 2 inflammatory biomarkers in patients with COPD and type 2 inflammation from the BOREAS trial who received dupilumab treatment. METHODS: BOREAS, a phase 3, multicentre, double-blind, randomised trial was conducted at 275 sites in 24 countries and included patients with COPD and type 2 inflammation (screening blood eosinophils ≥300 cells per μL). Patients were randomly assigned (1:1) to receive 300 mg of dupilumab every 2 weeks for 52 weeks or matching placebo. Randomisation was stratified by country and inhaled corticosteroid dose at baseline. This post-hoc analysis assessed blood eosinophil counts, fractional exhaled nitric oxide (FeNO), serum eotaxin-3, total plasma immunoglobulin E (IgE), and serum pulmonary and activation-regulated chemokine (PARC) concentrations in the safety population. The study was registered at ClinicalTrials.gov, NCT03930732 and is complete. FINDINGS: BOREAS was conducted between April 15, 2019, and May 2, 2023, and included 939 patients with COPD and type 2 inflammation. 468 patients were randomly assigned to receive 300 mg of dupilumab every 2 weeks for 52 weeks and 471 were randomly assigned to receive matching placebo. 319 (34%) participants were female and 620 (66%) were male. 657 (70%) were former smokers and 282 (30%) were current smokers. At week 52, greater median percentage reductions were observed in dupilumab versus placebo for most biomarkers (total IgE: -22·5% [IQR -30·4 to -16·5] vs -0·9% [-6·5 to 4·8]; FeNO: -28·6% [-57·1 to 0] vs -6·9% [-35·7 to 25·0]; eotaxin-3: -8·8% [-15·6 to -2·9] vs -0·4% [-5·6 to 5·0]; and PARC: -14·4% [-29·2 to 2·1] vs -0·8% [-13·9 to 17·2]). Reductions were similar across treatment groups by blood eosinophil counts. Exacerbation risk overall was reduced, with a greater magnitude of reduction in those with higher baseline blood eosinophil count (p=0·0056) and baseline FeNO (p=0·043). INTERPRETATION: Patients with COPD and type 2 inflammation who were given dupilumab showed reduced type 2 inflammatory biomarkers, with elevated blood eosinophil count and FeNO predicting greater treatment response. These findings support biomarker-driven treatment strategies to optimise therapy. FUNDING: Sanofi and Regeneron Pharmaceuticals.
2. ACE-tRNAs are a platform technology for suppressing nonsense mutations that cause cystic fibrosis.
ACE-tRNAs that recode UGA PTCs to leucine restored CFTR mRNA levels and channel activity across common CF nonsense mutations. A single ACE-tRNA variant rescued function in an airway cell line and two primary CF patient-derived intestinal models, indicating a broadly applicable platform for PTC suppression.
Impact: Demonstrates a genotype-agnostic, codon-level therapeutic strategy with functional rescue across multiple CFTR PTCs, advancing a platform applicable to CF and other nonsense-mediated diseases.
Clinical Implications: If delivery and safety challenges are addressed, ACE-tRNA therapy could offer a mutation-class solution for CF patients with PTCs independent of the original amino acid, complementing or replacing current modulator therapies.
Key Findings
- An ACE-tRNA decoding all UGA PTCs to leucine significantly rescued CFTR transcript abundance and channel function.
- Functional rescue was demonstrated in an immortalized airway cell line and two primary CF patient-derived intestinal cell models.
- Leucine-substituted CFTR variants were highly functional, supporting the feasibility of UGA-to-leucine recoding.
Methodological Strengths
- Multiple complementary model systems, including primary patient-derived cells, to validate functional rescue
- Simultaneous assessment of transcript rescue (NMD avoidance) and channel function
Limitations
- Preclinical in vitro models; in vivo delivery, durability, and immunogenicity not addressed
- Off-target decoding risks and proteome-wide consequences require thorough assessment
Future Directions: Develop safe delivery vehicles for airway epithelia, evaluate in vivo efficacy in CF animal models, and map proteome-wide effects and safety pharmacology for clinical translation.
Nonsense mutations arise from single nucleotide substitutions that result in premature termination codons (PTCs). PTCs result in little to no full-length protein production and decreased mRNA stability due to the nonsense-mediated mRNA decay (NMD) pathway. We provide evidence that anticodon-edited (ACE-) tRNAs efficiently suppress the most prevalent cystic fibrosis (CF)-causing PTCs, promoting significant rescue of endogenous cystic fibrosis transmembrane conductance regulator (CFTR) transcript abundance and channel function in different model systems. We show that our best-performing ACE-tRNA, which decodes all UGA PTCs to a leucine amino acid, markedly rescues CFTR function from the most prevalent CF-causing PTCs, all of which arose from nonleucine encoding codons. Using this single ACE-tRNA variant, we demonstrate significant rescue of CFTR function in an immortalized airway cell line and two different primary CF patient-derived intestinal cell models with CFTR nonsense mutations. Further, we demonstrate that leucine substitution CFTR variants are highly functional. Thus, ACE-tRNAs have promise as a platform therapeutic for CF and other nonsense-associated diseases.
3. Improved mRNA-based RSV vaccine with PreF forming enveloped virus-like particles.
Engineering PreF mRNA to recruit ESCRT/ALIX and form eVLPs produced higher and more durable neutralizing antibody responses in mice versus conventional PreF mRNA, with dose-sparing efficacy. Transcriptomics implicated TLR and chemokine pathways and platelet-associated signatures in enhanced antibody longevity.
Impact: Introduces a generalizable antigen-engineering strategy to improve durability and potency of mRNA vaccines against respiratory viruses, addressing a core limitation of current RSV vaccines.
Clinical Implications: If translated to humans, eVLP-forming mRNA could improve durability and reduce dose requirements for RSV vaccination, potentially enhancing protection in high-risk populations (infants, elderly).
Key Findings
- PreF-EABR mRNA forming eVLPs elicited higher and more persistent neutralizing antibodies than conventional PreF mRNA in mice.
- A 1 μg dose of PreF-EABR mRNA achieved viral load and pathology suppression comparable to 2.5 μg conventional PreF mRNA (dose-sparing).
- Transcriptomics showed activation of TLR and chemokine pathways and platelet-associated signatures linked to antibody longevity.
Methodological Strengths
- Head-to-head comparison against conventional mRNA with dose-ranging and virologic/pathology endpoints
- Mechanistic immunology readouts (germinal center and memory B cells) and transcriptomics
Limitations
- Murine-only data; human immunogenicity, durability, and safety remain untested
- Long-term persistence and breadth against diverse RSV strains need evaluation
Future Directions: Advance to NHP and early-phase human studies to evaluate safety, durability, and breadth; test eVLP strategy across other respiratory pathogens.
Respiratory syncytial virus (RSV) causes severe respiratory disease in infants and the elderly. However, natural infection fails to induce durable immune protection, and existing mRNA vaccines for older adults exhibit limited long-term efficacy. We developed an antigen engineering strategy inserting ESCRT/ALIX-binding region (EABR) into truncated RSV prefusion F (PreF) cytoplasmic tails to form enveloped virus-like particles (eVLPs). In murine models, PreF-EABR mRNA vaccines elicited higher, more persistent neutralizing antibodies than conventional PreF mRNA, correlating with enhanced germinal center B cell and memory B cell responses. A lower dose of PreF-EABR mRNA (1 μg) suppressed viral load and pathology comparable to higher-dose PreF mRNA (2.5 μg). Transcriptomic analysis showed PreF-EABR mRNA activated toll-like receptor and chemokine signaling pathways, enhancing antibody longevity via platelet-associated signatures. This study explores the development and possible mechanism of long-lasting RSV mRNA vaccines by eVLPs technology, which also suggest its potential application in other vaccines.