Daily Respiratory Research Analysis
Analyzed 58 papers and selected 3 impactful papers.
Summary
Three impactful respiratory studies stood out: a large randomized trial found no difference between paracetamol and ibuprofen in infant risk of eczema or bronchiolitis by age 1; a multi-cohort whole-genome analysis showed that polygenic telomere-length risk and rare variants jointly shape idiopathic pulmonary fibrosis endotypes and prediction; and an imaging-methods paper introduced a contactless framework using deformable diffusion models to localize thoracic tumors across respiratory motion.
Research Themes
- Pediatric respiratory outcomes and antipyretic choice
- Genomic endotyping and risk prediction in interstitial lung disease
- Respiratory motion modeling and contactless surgical navigation
Selected Articles
1. Paracetamol versus ibuprofen as required for fever or pain in the first year of life and the risk of eczema and bronchiolitis at age 1 year in New Zealand (PIPPA Tamariki): a multicentre, open-label, parallel-group, superiority, randomised controlled trial.
In 3,908 infants randomized to as-needed paracetamol or ibuprofen through age 1, there was no significant difference in eczema incidence or bronchiolitis hospitalisation. Serious adverse events were uncommon and similar between groups, with none attributed to study medication.
Impact: This large, pragmatic randomized trial addresses longstanding concerns about paracetamol in infancy and provides high-level evidence that antipyretic choice does not alter early eczema or bronchiolitis risk.
Clinical Implications: Clinicians can advise caregivers that either paracetamol or ibuprofen is acceptable for fever or pain in the first year without expecting differences in eczema or bronchiolitis risk by age 1.
Key Findings
- Eczema occurred in 16.2% (paracetamol) vs 15.4% (ibuprofen); absolute risk difference 0.8% (95% CI −1.5 to 3.1), adjusted OR 1.10 (95% CI 0.92–1.32).
- Bronchiolitis hospitalisation occurred in 4.9% vs 4.3%; absolute risk difference 0.7% (95% CI −0.6 to 2.0), adjusted OR 1.23 (95% CI 0.82–1.71).
- Serious adverse events were rare and similar (0.4% vs 0.5%), with none attributed to trial medication.
- Trial enrolled 3,908 infants across three centres with stratified randomization and intention-to-treat analysis.
Methodological Strengths
- Large, multicentre randomized controlled design with stratified allocation and intention-to-treat analysis.
- Pre-specified, clinically meaningful outcomes (eczema by UK criteria; bronchiolitis hospitalisation) and comprehensive safety reporting.
Limitations
- Open-label design may introduce reporting or care-seeking biases.
- As-needed dosing and caregiver administration could lead to variability in exposure; outcomes limited to the first year of life.
Future Directions: Longer-term follow-up into childhood to assess wheeze/asthma outcomes and neurodevelopment; mechanistic studies to explore immunologic effects of antipyretics.
BACKGROUND: In non-experimental studies, early-life exposure to paracetamol is associated with an increased risk of eczema and wheeze. We aimed to compare paracetamol with ibuprofen, as required for fever or pain in the first year of life, for the risk of eczema and bronchiolitis at age 1 year. METHODS: PIPPA Tamariki is a multicentre, open-label, two-arm, parallel-group, superiority, randomised controlled trial done at three sites in Auckland and Wellington in New Zealand. Infants younger than 8 weeks and born in New Zealand were randomly assigned (1:1) to paracetamol alone (15 mg/kg every 6 h at age <1 months and every 4 h at age ≥1 months) or ibuprofen alone (5 mg/kg every 6 h at age <3 months and 10 mg/kg every 6 h at age ≥3 months), received orally as required for fever or pain, until age 1 year. Dosing was based on the New Zealand Formulary for Children. Research staff used REDCap for randomisation, which was stratified by recruitment site, maternal asthma status, and multiple birth. Key outcomes were eczema as defined by the UK Diagnostic Criteria or eczema hospitalisation in the first year of life, and hospitalisation for bronchiolitis as defined by at least one hospitalisation for bronchiolitis, viral-induced wheeze, or asthma in the first year of life. Analysis was according to the intention-to-treat principle. This trial is registered with the Australian New Zealand Clinical Trials Registry, ACTRN12618000303246 (active, not recruiting). FINDINGS: Between April 18, 2018, and July 28, 2023, 3923 infants were enrolled. 15 participants withdrew, leaving 3908 infants (1985 were randomly assigned to the paracetamol group, and 1923 to the ibuprofen group) in the intention-to-treat population. Of these participants, 1914 (49·0%) were female and 1994 (51·0%) were male; 609 (15·6%) were Māori, 607 (15·5%) were Pacific, 926 (23·7%) were Asian, and 1754 (44·9%) were New Zealand European or other. Eczema occurred in 322 (16·2%) of 1985 participants in the paracetamol group and 296 (15·4%) of 1923 participants in the ibuprofen group (absolute risk difference 0·8% [95% CI -1·5 to 3·1]; p=0·48; adjusted odds ratio [OR] 1·10 [95% CI 0·92 to 1·32]; p=0·29). Bronchiolitis occurred in 98 (4·9%) participants in the paracetamol group and 82 (4·3%) participants in the ibuprofen group (absolute risk difference 0·7% [95% CI -0·6 to 2·0]; p=0·32; adjusted OR 1·23 [95% CI 0·82 to 1·71]; p=0·21). 19 serious adverse events were reported in 17 participants (eight [0·4%] of 1985 in the paracetamol group and nine [0·5%] of 1923 in the ibuprofen group; adjusted OR 0·47 [95% CI 0·14-1·56; p=0·21]); none were attributed to trial medication. INTERPRETATION: There was no evidence of an important difference between paracetamol and ibuprofen in the risk of eczema or bronchiolitis at age 1 year. FUNDING: Health Research Council of New Zealand, Cure Kids New Zealand, University of Auckland.
2. Polygenic risk and rare variants in endotypes of idiopathic pulmonary fibrosis: a genetic analysis of population-based and case-control cohorts.
Across discovery and replication cohorts, both a telomere-length polygenic score and an IPF PRS excluding MUC5B were independently associated with IPF risk, and jointly with rare variants yielded strong prediction (AUC up to 0.89). Telomere-length PRS had the greatest effect in endotypes without rare variants but with short telomeres.
Impact: This work refines IPF genetic architecture by integrating common polygenic telomere biology with rare variants, delineating endotypes and substantially improving predictive performance.
Clinical Implications: Incorporating telomere-length PRS with rare variant screening can enhance risk stratification, support earlier identification of high-risk patients, and inform trial enrichment strategies.
Key Findings
- In the discovery cohort (777 IPF, 2905 controls), telomere-length PRS (OR 1.63, 95% CI 1.47–1.81) and IPF-PRS excluding MUC5B (OR 1.60, 95% CI 1.44–1.77) were associated with IPF; effects replicated in TOPMed and UK Biobank.
- 23–43% of IPF patients had damaging rare variants or telomeres shorter than the 10th percentile.
- Telomere-length PRS had the strongest effect among IPF patients without rare variants but with short telomeres (OR 2.02 discovery; 1.70 UK Biobank).
- Combining clinical variables, rare variants, MUC5B, IPF PRS, and telomere-length PRS achieved AUC 0.89 (discovery and TOPMed) and 0.77 (UK Biobank).
- Telomere-length PRS contributed 8–13% of the explained genetic liability across cohorts.
Methodological Strengths
- Whole-genome sequencing across discovery and two large replication cohorts with harmonized PRS construction.
- Rigorous adjustment for ancestry, endotype-stratified analyses, direct leukocyte telomere length measurement in two cohorts, and cross-validated AUC estimation.
Limitations
- Observational genetic analysis cannot establish causality; potential ancestry-specific performance and limited generalizability beyond studied populations.
- Telomere length measured in blood may not fully reflect lung tissue biology; endotype definitions depend on chosen cutoffs.
Future Directions: Prospective validation in diverse ancestries, integration into clinical risk calculators, and interventional studies targeting telomere biology in defined IPF endotypes.
BACKGROUND: Idiopathic pulmonary fibrosis (IPF) and telomere length are both strongly linked to rare and common genetic variants. Shortened telomere length might itself be causal for IPF. We aimed to evaluate whether rare and common variants compete or cooperate to confer genetic risk of IPF uniformly. METHODS: In this genetic analysis, we used whole-genome sequencing (WGS) data from a discovery case-control cohort sequenced at Columbia University and validated findings using WGS data from Trans-Omics for Precision Medicine (TOPMed) and UK Biobank. In all cohorts, we identified rare damaging variants in disease-associated genes and computed control-normalised non-overlapping polygenic risk scores (PRS) for IPF and telomere length. We assessed the MUC5B rs35705950 single-nucleotide polymorphism (SNP), an IPF common risk variant with a large effect, independently from the polygenic scores. Telomere length in blood leukocytes was measured using a quantitative PCR assay for the discovery cohort and UK Biobank validation cohort. We conducted logistic regression (adjusting for age, sex, and principal components of ancestry) to evaluate the association between IPF risk and the MUC5B SNP, the IPF PRS excluding MUC5B (IPF-PRS-noMUC5B), and the PRS for telomere length in the overall cohort and analysed their effects in patient subgroups for IPF endotypes (carriers and non-carriers of rare variants stratified by telomere length cutoffs). To assess disease prediction, we calculated cross-validated area under the receiver operating receiver operating curve (AUC). We also compared the liability of IPF explained by genetic variables. FINDINGS: The discovery cohort was recruited between April 23, 2003 and June 19, 2019 and included 777 patients with IPF and 2905 controls. We replicated the analyses in the TOPMed (1148 patients with IPF and 5202 controls) and UK Biobank (2739 patients with IPF and 395 331 controls) cohorts. 23-43% of patients with IPF had damaging rare variants or telomeres shorter than the tenth percentile. Analysis of the association of genetic variables with IPF diagnosis yielded odds ratios of 1·63 (95% CI 1·47-1·81) for telomere length PRS and 1·60 (1·44-1·77) for IPF-PRS-noMUC5B in the discovery cohort, with similar effect sizes for the two variables in the replication cohorts (1·47, 1·36-1·59 vs 1·37, 1·25-1·50 in TOPMed; 1·24, 1·19-1·29 vs 1·25, 1·21-1·30 in UK Biobank). The telomere length PRS had the greatest effect on disease risk in patients with IPF not harbouring rare variants and with telomere length shorter than the tenth percentile in the discovery cohort (2·02, 1·76-2·33) and UK Biobank replication cohort (1·70, 1·56-1·85). Accounting for clinical variables and all genetic variables (rare variants, MUC5B SNP, IPF PRS, and telomere length PRS) led to the best disease prediction in the discovery cohort (combined AUC 0·89), TOPMed cohort (0·89), and UK Biobank cohort (0·77). Rare and common variants contributed jointly to the genetic liability of IPF. The telomere length PRS accounted for 13% of the explained genetic liability of IPF in the discovery cohort and 8% and 13% in the TOPMed and UK Biobank cohorts, respectively. INTERPRETATION: Common and rare genetic variation confer context-specific genetic risk in patients with IPF both competitively and cooperatively. In contrast to known IPF common risk variants, the telomere length PRS, which includes more than 180 genetic loci not previously associated with IPF, is associated with increased risk of disease in patients with specific IPF endotypes. Polygenic risk from telomere-associated common variants is a key feature of genetic heterogeneity in IPF. FUNDING: US National Institutes of Health, UK Medical Research Council, and UK National Institute for Health and Care Research.
3. Robust non-rigid image-to-patient registration for contactless dynamic thoracic tumor localization using recursive deformable diffusion models.
The authors introduce a contactless framework that reconstructs full 4DCT respiratory sequences from two phase scans via a recursive deformable diffusion model and aligns patients in real time using RGB-D surface point clouds with constrained GICP. Validation shows high anatomical fidelity (PSNR ~34 dB) and feasibility of a 4DCT-based navigation module for thoracic tumor tracking.
Impact: Methodologically advances thoracic surgical navigation by combining generative modeling of respiratory motion with contactless surface-based registration, potentially reducing radiation and setup burden.
Clinical Implications: If prospectively validated, this approach could support precise intraoperative tumor localization and real-time tracking without fiducials, benefiting thoracic surgery and radiotherapy workflows.
Key Findings
- Recursive Deformable Diffusion Model reconstructed full 4DCT sequences from only end-inhalation and end-exhalation scans.
- Contactless non-rigid registration using stereo RGB-D–derived skin point clouds with normal vector and expansion–contraction constraints improved robustness.
- Validation on public datasets and volunteer trials showed anatomical fidelity with PSNR 34.01 ± 2.78 dB.
- A preliminary 4DCT-based registration and surgical navigation module demonstrated feasibility for high-precision tumor tracking.
Methodological Strengths
- Innovative combination of generative diffusion modeling for respiratory motion with constrained RGB-D surface registration.
- Validation across public datasets and volunteer trials with quantitative metrics (PSNR) and a functional navigation prototype.
Limitations
- Preliminary validation without large-scale prospective clinical trials; limited reporting of target registration error versus intraoperative ground truth.
- Generalizability across diverse patient anatomies and surgical environments remains to be established; real-time performance constraints not fully characterized.
Future Directions: Prospective clinical validation with intraoperative ground truth, benchmarking against fiducial-based methods, optimization for low-latency computation, and integration into radiotherapy gating.
Deformable image-to-patient registration is essential for surgical navigation and medical imaging, yet real-time computation of spatial transformations across modalities remains a major clinical challenge-often being time-consuming, error-prone, and potentially increasing trauma or radiation exposure. While state-of-the-art methods achieve impressive speed and accuracy on paired medical images, they face notable limitations in cross-modal thoracic applications, where physiological motions such as respiration complicate tumor localization. To address this, we propose a robust, contactless, non-rigid registration framework for dynamic thoracic tumor localization. A highly efficient Recursive Deformable Diffusion Model (RDDM) is trained to reconstruct comprehensive 4DCT sequences from only end-inhalation and end-exhalation scans, capturing respiratory dynamics reflective of the intraoperative state. For real-time patient alignment, we introduce a contactless non-rigid registration algorithm based on GICP, leveraging patient skin surface point clouds captured by stereo RGB-D imaging. By incorporating normal vector and expansion-contraction constraints, the method enhances robustness and avoids local minima. The proposed framework was validated on publicly available datasets and volunteer trials. Quantitative evaluations demonstrated the RDDM's anatomical fidelity across respiratory phases, achieving an PSNR of 34.01 ± 2.78 dB. Moreover, we have preliminarily developed a 4DCT-based registration and surgical navigation module to support tumor localization and high-precision tracking. Experimental results indicate that the proposed framework preliminarily meets clinical requirements and demonstrates potential for integration into downstream surgical systems.