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Yearly Report

Ards Research Analysis

2024
11 papers selected
624 analyzed

In 2025, ARDS science advanced through mechanistic breakthroughs and precision operationalization. A coupled air–blood barrier flow model quantified biophysical thresholds for edema onset and clearance, reframing ventilator and PEEP optimization. Interpretable, open-source NLP/ML brought automated ARDS recognition into EHRs, enabling prospective screening and standardized case ascertainment. Immune–epigenetic circuits were resolved, including an oxPL–AKT–EZH2 pathway that epigenetically silences

Summary

In 2025, ARDS science advanced through mechanistic breakthroughs and precision operationalization. A coupled air–blood barrier flow model quantified biophysical thresholds for edema onset and clearance, reframing ventilator and PEEP optimization. Interpretable, open-source NLP/ML brought automated ARDS recognition into EHRs, enabling prospective screening and standardized case ascertainment. Immune–epigenetic circuits were resolved, including an oxPL–AKT–EZH2 pathway that epigenetically silences IL-10 and a basophil IL-4–to–neutrophil axis required for resolution. Translational biology connected mitochondrial signaling (MOTS-c) to both a therapeutic avenue and a high-performing perioperative ARDS biomarker. Endothelial-targeted and ferroptosis-linked mechanisms (H3K14 lactylation) and a first-in-class p38α:MK2 modulator consolidated host-directed therapy. Dynamic oxygenation trajectories and phenotype stability analyses delivered actionable precision frameworks for ventilation and steroid use. Together, these advances prioritized mechanism-led personalization, biomarker-enriched trials, and scalable recognition tools over guideline-driven shifts.

Selected Articles

1. Flow mechanisms of the air-blood barrier.

PLoS Computational Biology · 2025PMID: 40208907

First coupled capillary–interstitium–alveolus flow model deriving closed-form expressions for interstitial pressure and a critical capillary pressure predicting edema onset. Quantifies membrane shear stresses, clearance pathways, and highlights active epithelial reabsorption as a key determinant of edema dynamics.

Impact: Provides a quantitative, testable biophysical foundation linking vascular–alveolar dynamics to clinical thresholds for ventilator and PEEP optimization.

Clinical Implications: Enables bedside hypothesis testing for PEEP strategies that avoid exceeding critical pressures and supports targets to augment epithelial fluid clearance.

Key Findings

  • Closed-form critical capillary pressure predicting edema onset
  • Quantification of membrane shear and clearance routing
  • Role of active epithelial reabsorption in edema dynamics

Methodological Strengths

  • Coupled multi-compartment flow modeling with closed-form solutions
  • Mechanistic links to measurable clinical thresholds

Limitations

  • Requires clinical calibration for bedside use
  • Simplifications may not capture all heterogeneities of injured lung

Future Directions: Calibrate model parameters in prospective ICU cohorts, integrate with EIT and trajectory phenotyping to guide adaptive ventilation trials.

Original abstract not available from provided data. Please refer to the PubMed record or publisher for the first 500 characters of the abstract.

2. Epigenetic silencing of interleukin-10 by host-derived oxidized phospholipids supports a lethal inflammatory response to infections.

Immunity · 2025PMID: 40680750

Mouse and human data delineate a lipid–epigenetic axis where oxidized phospholipids inhibit AKT, increase methionine flux and EZH2 activity, epigenetically silencing IL-10 and amplifying inflammation. Targeting oxPLs or EZH2 mitigated dysregulated inflammation without changing pathogen burden.

Impact: Reframes hyperinflammation control via a druggable lipid–epigenetic circuit with clear biomarker candidates (oxPLs, EZH2, IL-10).

Clinical Implications: Supports biomarker-led early-phase trials of EZH2 modulation or oxPL-neutralization in ARDS/sepsis with embedded translational readouts.

Key Findings

  • oxPLs epigenetically silence IL-10 via AKT inhibition and EZH2 activation
  • Inflammation is amplified without reducing pathogen burden
  • Targeting oxPLs/EZH2 mitigates dysregulated inflammation

Methodological Strengths

  • Cross-species validation with mechanistic perturbations
  • Integration of lipidomics and epigenetic assays

Limitations

  • Early-stage translational readiness without clinical trial data
  • Heterogeneity of human ARDS phenotypes may influence biomarker performance

Future Directions: Validate oxPL/EZH2/IL-10 panels in ARDS cohorts and test EZH2 modulators or oxPL neutralizers in enriched early-phase trials.

Original abstract not available from provided data. Please refer to the PubMed record or publisher for the first 500 characters of the abstract.

3. Open-source computational pipeline flags instances of acute respiratory distress syndrome in mechanically ventilated adult patients.

Nature Communications · 2025PMID: 40701969

An interpretable, externally validated NLP/ML pipeline operationalized the Berlin Definition across radiology reports and clinician notes, identifying ARDS with high sensitivity and far exceeding documentation rates, ready for EHR integration.

Impact: Directly addresses ARDS under-recognition with an open-source, scalable tool that changes screening, safety surveillance, and trial enrollment.

Clinical Implications: Embed into health systems to trigger lung-protective bundles, proning, and consults; prospectively assess alert burden and outcomes.

Key Findings

  • High-sensitivity ARDS identification on external validation
  • Operationalization of Berlin criteria across clinical text sources
  • Detection far exceeds clinical documentation, revealing under-recognition

Methodological Strengths

  • Interpretable ML with open-source code and external validation
  • Integration across heterogeneous EHR text sources

Limitations

  • False-positive rate requires site-specific tuning
  • Impact on clinical outcomes not yet proven in multicenter trials

Future Directions: Conduct pragmatic multicenter studies measuring patient outcomes, alert fatigue, and trial-screening efficiency; extend models to trajectory-aware phenotyping.

Original abstract not available from provided data. Please refer to the PubMed record or publisher for the first 500 characters of the abstract.

4. MOTS-c attenuates lung ischemia-reperfusion injury via MYH9-Dependent nuclear translocation and transcriptional activation of antioxidant genes.

Redox Biology · 2025PMID: 40403491

MOTS-c translocates to the nucleus via MYH9 to activate ARE-containing antioxidant genes, reduces injury and mortality in rat LIRI, and perioperative ΔMOTS-c within 24 hours of CPB predicts ARDS (AUC 0.885).

Impact: Bridges mitochondrial signaling to both a therapeutic strategy and a perioperative biomarker with strong predictive performance.

Clinical Implications: Supports perioperative ARDS risk stratification with ΔMOTS-c and motivates early-phase prophylactic trials of MOTS-c analogs.

Key Findings

  • MYH9-dependent nuclear translocation of MOTS-c activates antioxidant genes
  • Exogenous MOTS-c reduces lung injury and mortality in rats
  • Perioperative ΔMOTS-c predicts ARDS after CPB (AUC 0.885)

Methodological Strengths

  • Mechanistic pathway resolution with in vivo efficacy
  • Clinical biomarker evaluation with strong discrimination

Limitations

  • Perioperative cohort size and single-center biomarker validation may limit generalizability
  • Therapeutic dosing and safety in humans remain untested

Future Directions: Expand multicenter validation of ΔMOTS-c and advance MOTS-c analogs into safety/PK trials with oxidative stress endpoints.

Original abstract not available from provided data. Please refer to the PubMed record or publisher for the first 500 characters of the abstract.

5. Emerging roles of basophils in the resolution of acute respiratory distress syndrome.

The European Respiratory Journal · 2025PMID: 40744690

In murine lung injury, basophil-derived IL-4 signaling to neutrophils is required for resolution, suppressing anti-apoptotic and pro-inflammatory programs; causal roles were defined via genetic perturbations and single-cell RNA-seq.

Impact: Establishes a cellular pro-resolution circuit, expanding therapeutic strategies beyond simple anti-inflammation.

Clinical Implications: Motivates IL-4 pathway modulation and basophil-focused biomarkers for stratified immunotherapy in ARDS.

Key Findings

  • Basophil depletion impairs resolution without preventing inflammation onset
  • Basophils are the primary IL-4 source in the injured lung
  • Neutrophil IL-4R is necessary for resolution

Methodological Strengths

  • Causal genetic perturbations with single-cell resolution
  • Cross-validation of cell-intrinsic signaling requirements

Limitations

  • Predominantly preclinical murine evidence
  • Human biomarker generalizability needs validation

Future Directions: Develop IL-4 axis modulators and basophil/neutrophil biomarker panels; test pro-resolution adjuncts in enriched early-phase trials.

Original abstract not available from provided data. Please refer to the PubMed record or publisher for the first 500 characters of the abstract.

6. H3K14la drives endothelial dysfunction in sepsis-induced ARDS by promoting SLC40A1/transferrin-mediated ferroptosis.

MedComm · 2025PMID: 39822760

Integrative lactylome/proteome and Cut&Tag mapping link glycolysis-driven histone H3K14 lactylation to endothelial ferroptosis via TFRC/SLC40A1 promoters, coupling metabolism to lung vascular injury in septic ARDS.

Impact: Opens an actionable epigenetic–metabolic axis for endothelial protection and ferroptosis mitigation in ARDS.

Clinical Implications: Supports testing glycolysis inhibitors, lactylation modulators, or ferroptosis blockers targeted to pulmonary endothelium.

Key Findings

  • Sepsis elevates H3K14 lactylation in pulmonary endothelium
  • H3K14la enriches TFRC/SLC40A1 promoters, promoting ferroptosis
  • Glycolysis suppression reduces H3K14la and endothelial activation

Methodological Strengths

  • Multi-omics integration with locus-specific mapping
  • Functional validation linking epigenetic mark to ferroptosis

Limitations

  • Preclinical models require validation in human ARDS tissues
  • Translational druggability of lactylation remains to be proven

Future Directions: Assess H3K14la as a biomarker and test endothelial-targeted ferroptosis modulators in early-phase trials.

Original abstract not available from provided data. Please refer to the PubMed record or publisher for the first 500 characters of the abstract.

7. PRRSV-2 nsp2 Ignites NLRP3 inflammasome through IKKβ-dependent dispersed trans-Golgi network translocation.

PLoS Pathogens · 2025PMID: 39869629

Viral nsp2 recruits IKKβ to drive NLRP3 trafficking to the dispersed trans-Golgi network, enabling ASC polymerization and inflammasome activation; conservation across viruses nominates a druggable host pathway.

Impact: Identifies a conserved host trafficking axis (IKKβ→NLRP3) with direct relevance to viral pneumonias and ARDS.

Clinical Implications: Supports development of IKKβ/NLRP3 modulators or trafficking inhibitors and validation in human ARDS biospecimens.

Key Findings

  • nsp2 interacts with NLRP3 and recruits IKKβ
  • IKKβ-dependent dTGN translocation enables inflammasome activation
  • Mechanism conserved across multiple viruses

Methodological Strengths

  • Mechanistic dissection with viral and host perturbations
  • Cross-virus validation enhances generalizability

Limitations

  • Translational inhibitors not yet demonstrated in vivo
  • Human tissue validation needed for ARDS specificity

Future Directions: Screen IKKβ–NLRP3 trafficking inhibitors and test in live-virus lung injury models; evaluate axis activity in ARDS biospecimens.

Original abstract not available from provided data. Please refer to the PubMed record or publisher for the first 500 characters of the abstract.

8. First-in-class MAPK p38α: MAPK-activated protein kinase 2 dual signal modulator with anti-inflammatory and endothelial-stabilizing properties.

The Journal of Pharmacology and Experimental Therapeutics · 2024PMID: 39969269

GEn-1124 destabilizes the activated p38α:MK2 complex without blocking p38 catalysis, stabilizes pulmonary endothelial barrier function, and improves survival in murine ALI and influenza models.

Impact: Introduces a mechanistically novel, host-directed molecule with survival benefit across ALI models, charting a translational path for endothelial protection.

Clinical Implications: If safe in humans, could reduce vascular leak/VILI as an adjunct to lung-protective ventilation; target-engagement biomarkers will be essential.

Key Findings

  • Destabilization of activated p38α:MK2 without catalytic p38 blockade
  • Endothelial barrier stabilization and survival benefit in ALI/influenza
  • Enhanced activity vs parent compound in human pulmonary endothelium

Methodological Strengths

  • Mechanistic target engagement with multi-model in vivo efficacy
  • Human endothelial cell validation of barrier effects

Limitations

  • Preclinical stage without human PK/PD and safety data
  • Specificity and off-target risk need comprehensive profiling

Future Directions: Advance to first-in-human studies with endothelial leak biomarkers; explore combination with ventilator strategies minimizing mechanical power.

Original abstract not available from provided data. Please refer to the PubMed record or publisher for the first 500 characters of the abstract.

9. Temporal stability of phenotypes of acute respiratory distress syndrome: clinical implications for early corticosteroid therapy and mortality.

Intensive Care Medicine · 2025PMID: 40839098

Across IPD from six RCTs and a large cohort, a clinical classifier tracked 30-day phenotype transitions and linked hyper- vs hypoinflammatory states to opposing corticosteroid effects, underscoring the need for reassessment (e.g., day 3).

Impact: Operationalizes dynamic phenotyping with routine data and provides actionable guidance for phenotype-guided steroid therapy and trial stratification.

Clinical Implications: Prefer early assessment and day-3 reassessment; favor steroids in persistent hyperinflammation and avoid/de-escalate in hypoinflammation pending prospective validation.

Key Findings

  • Hyper- vs hypoinflammatory phenotypes exhibit opposite steroid effects
  • Frequent transitions by day 3 necessitate reassessment
  • Classifier feasible with routine clinical variables

Methodological Strengths

  • IPD meta-analysis across RCTs combined with large cohort
  • Clinically deployable classifier and temporal analysis

Limitations

  • Observational elements limit causal inference
  • Prospective interventional validation is still needed

Future Directions: Prospectively test phenotype-guided steroid regimens and embed reassessment points in adaptive protocols.

Original abstract not available from provided data. Please refer to the PubMed record or publisher for the first 500 characters of the abstract.

10. Dynamic oxygenation subgroup bringing new insights in ARDS: more predictive of outcomes and response to PEEP than static PaO2/FiO2.

Thorax · 2025PMID: 40393717

Across training and external validation cohorts, three early PaO2/FiO2 trajectories outperformed Berlin categories for prognostication and PEEP responsiveness, enabling dynamic, clinically actionable phenotypes.

Impact: Replaces static severity labels with dynamic trajectories that guide ventilation and trial design.

Clinical Implications: Incorporate 72-hour oxygenation trajectories into early assessments to tailor PEEP and inform adaptive enrollment.

Key Findings

  • Three distinct PaO2/FiO2 trajectories identified and validated
  • Superior outcome and PEEP-response prediction vs Berlin categories
  • Framework supports trajectory-guided ventilation and stratified trials

Methodological Strengths

  • Large external validations across datasets
  • Clinically interpretable, early-time-window phenotyping

Limitations

  • Observational design limits causal inference
  • Implementation requires workflow integration and EHR support

Future Directions: Pair trajectories with EIT and mechanical power targets in adaptive ventilation trials.

Original abstract not available from provided data. Please refer to the PubMed record or publisher for the first 500 characters of the abstract.

11. Identification and validation of robust hospital-acquired pneumonia subphenotypes associated with all-cause mortality: a multi-cohort derivation and validation.

Intensive Care Medicine · 2025PMID: 40261385

Unsupervised clustering across multiple cohorts identified two robust HAP subphenotypes linked to mortality, inflammation, microbiome features, and differential antibiotic response, with a simplified classifier for deployment.

Impact: Delivers externally validated, clinically actionable phenotypes enabling prognostic and predictive enrichment relevant to ARDS care pathways.

Clinical Implications: Use the classifier for high-risk identification, intensified monitoring, and phenotype-stratified trials of antimicrobials and host-directed therapies.

Key Findings

  • Two-cluster HAP model generalized across cohorts and an RCT dataset
  • Higher-risk subphenotype showed worse oxygenation and higher mortality
  • Differential antibiotic response underscored predictive value

Methodological Strengths

  • External validation across independent datasets
  • Provision of a simplified, deployable classifier

Limitations

  • Causal mechanisms underlying clusters remain to be elucidated
  • Generalizability across healthcare systems requires testing

Future Directions: Embed subphenotype classifiers in ICU workflows and adaptive trials, integrating biomarker panels for predictive enrichment.

Original abstract not available from provided data. Please refer to the PubMed record or publisher for the first 500 characters of the abstract.